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Deep-sea sponges use ammonium and difficult organic matter via symbiotic microbes to survive in dark depths

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Deep-Sea Sponges Reveal a Surprising Partnership with Microbes to Survive the Abyss

A new study published in Microbiome has uncovered how deep-sea sponges from the Calyx genus, collected at a depth of 830 meters, rely on two distinct types of microbial partners to thrive in one of Earth’s most extreme environments.

Approximately 16% of the symbiotic microbes perform chemosynthesis, using ammonium—a waste product from the sponge—as an energy source to fix carbon dioxide into biomass.

This process mirrors photosynthesis, but instead of sunlight, these microbes harness chemical energy in the perpetual darkness of the deep sea.

The remaining 84% of microbial partners are heterotrophic. They possess specialized enzymes that break down complex organic compounds like xylan and pectin—major components of algal cell walls that are normally difficult to digest. This ability allows the microbes to transform low-quality organic matter into nutrients the sponge can use.

The Unseen World of the Deep

By volume, about 95% of the ocean is permanently dark, cold, and deep. In these depths, sponge gardens rank among the largest ecosystems on the seafloor, spanning thousands of square kilometers and providing critical habitat for countless other organisms.

These sponges are also biological powerhouses. They can filter thousands of liters of water daily, releasing nutrients that support surrounding marine life. Despite their ecological importance, scientists have long understood very little about how deep-sea sponges actually survive.

A Fragile Ecosystem Under Threat

The discovery of these complex microbial relationships comes at a critical time. The deep-sea sponges and their gardens face significant human threats:

  • Deep-sea trawling physically destroys sponge habitats.
  • Deep-sea mining for rare metals threatens to disrupt these ecosystems, with recovery potentially taking centuries.

The United Nations has classified deep-sea sponge gardens as vulnerable marine ecosystems, but researchers argue that further protection is urgently needed before these habitats are lost.

Conclusion: A Crucial Link in Earth's Carbon Cycle

This study highlights the complex biogeochemical role of deep-sea sponges and their microbial symbionts in carbon cycling. The findings suggest these ecosystems play a far more significant part in the planet's carbon budget than previously understood.

Human activities risk destroying these ecosystems before their full contribution to Earth's carbon cycle is understood.